New Simmaron publication shows mechanisms of PEM in ME/CFS

In new findings, our study shows that lack of ATG13 inside cells induces macrophages to take on an inflammatory role, impairing myelin in muscles, in a process aggravated by exercise.

Inflammation Research, "Genetic depletion of the early autophagy protein ATG13 impairs mitochondrial energy metabolism, augments oxidative stress, induces the polarization of macrophages to the M1 inflammatory mode, and compromises myelin integrity in skeletal muscle"  Jan 27, 2026

 
 

The Enduring Question: Why Do Patients have PEM?

When our science team published that a subset of ME/CFS patients have inactive ATG13 in 2022, we followed it up with complementary studies to:

  1. Demonstrate what missing ATG13 looked like in animal models, developing the first mouse models to display post-exertional malaise (PEM) - and publishing our model.
  2. Run a treatment trial of mTOR inhibitor rapamycin to address dysfunctional autophagy caused by inactive ATG13, publishing Phase 1 results in high impact Journal of Translational Medicine and now preparing a placebo-controlled trial.
  3. Explain how missing ATG13 in cells causes symptoms of PEM, now describing in publication a cascade of inflammation that implicates new molecules and processes, to drive treatment discovery in the field.
  4. Develop a blood test that can help predict which patients are likely to respond to rapamycin to take the guess-work out of treating ME/CFS. 
 

Explaining the Molecular Mechanism Behind PEM

Findings: In our current publication, we demonstrate that the genetic depletion of ATG13 gene and the subsequent autophagy impairment may initiate a series of metabolic changes in myeloid cells. Autophagy, which is a necessary clean up process for cells that revitalizes energy metabolism, doesn't work correctly when ATG13 is missing.

  • The changes we document start with the deficit in mitochondrial oxygen consumption, 
  • then energy-deficient cells produce inflammatory reactive oxygen species, or oxidative stress,
  • then an enzyme called SIRT1 becomes inactive, which neutralizes NF-κB, turning off this anti-inflammatory switch,
  • then these series of metabolic changes induce macrophages to take on an inflammatory phenotype, impairing myelin integrity in muscle serving nerves. 
  • And the inflammatory steps worsen with exercise, as demonstrated in ATG13 deficient mice after time on a treadmill.

Summary: The pathway we describe highlights how NF-kB-mediated inflammatory changes in myeloid cells may contribute to the symptoms of muscle fatigue, post-exertional malaise, and potentially post-infectious fatigue syndromes.

Collaborators: University of Wisconsin Milwaukee, Milwaukee Institute of Drug Discovery 

What's New from this Publication?

Delineating the way that impaired autophagy contributes to PEM is brand new.

Polarized macrophages, SIRT1, and NF-kB are identified as actors in the inflammatory cascade that follows impaired autophagy when ATG13 is missing.

Identifying new culprits and the mechanism behind PEM could open the door to new treatment targets, the #1 need for patients.

 
 

Our findings in this publication reinforce the hypothesis of our rapamycin treatment trial, while identifying new molecules to target to change or eliminate PEM.

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